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04 / 07 / 2023
The article“Evolution of sexualsystems, sex chromosomes andsex-linked gene transcription inflatworms and roundworms" madit into the Top 25 NatureCommunications life andbiological sciences articles of 2022.
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06 / 01 / 2023
Biggest ever study of primate genomes has surprises for humanity
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06 / 01 / 2023
Hundreds of new primate genomes offer window into human health—and our past
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R. Li, X. Dai, J. Zheng, R. SL, Y. Qi, et al. Juvenile hormone as a key regulator for asymmetric caste differentiation in ants.
Proceedings of the National Academy of Sciences
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M. Ali, Younas, L., Liu, J., Zhou, Q. Development and Evolution of Drosophila Chromatin Landscape in a 3D genome context.
Nature communications
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P.A. O’Brien, S.J. Robbins, S. Tan, L. Rix, D.J. Miller, N.S. Webster, et al. Comparative genomics identifies key adaptive traits of sponge-associated microbial symbionts.
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New Phytologist
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X. Zhang, Xie, N., Ding, G., Ning, D., Dai, W., Xiong, Z., et al. An evolutionarily conserved pathway mediated by neuroparsin-A regulates reproductive plasticity in ants.
PLOS Biology
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K. Wu, D. Qin, Y. Qian, H. Liu. A new era of mutation rate analyses : Concepts and methods.
Zoological Research
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Nature Reviews Genetics
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Systematic Biology
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M. Tao, J. Chen, C. Cui, Y. Xu, J. Xu, Z. Shi, et al. Identification of a longevity gene through evolutionary rate covariation of insect mito-nuclear genomes.
Nature Aging
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K. Wanders, G. Chen, S. Feng, T. Székely, A.O. Urrutia. Role-reversed polyandry is associated with faster fast-Z in shorebirds.
Proceedings B
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G. Chen, D. Yu, Y. Yang, X. Li, X. Wang, D. Sun, et al. Adaptive expansion of ERVK solo-LTRs is associated with Passeriformes speciation events.
Nature communications
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Nature
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S. Mirarab, I. Rivas-González, S. Feng, J. Stiller, Q. Fang, U. Mai, et al. A region of suppressed recombination misleads neoavian phylogenomics.
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Y Xie and G Zhang. Phylogenomic analyses unraveled the evolution of viral tolerance in bats.
Cell Genomics
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Nature
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B. Hu, X. Zhuang, L. Zhou, G. Zhang, D. Cooper, D. Wu. Deciphering the role of rapidly evolving conserved elements in primate brain development and exploring their potential involvement in Alzheimer’s disease.
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P. A. O'Brien, S. Tan, P. R. Frade, S. J. Robbins, J. P. Engelberts, S. C. Bell, et al. Validation of key sponge symbiont pathways using genome-centric metatranscriptomics.
Environmental Microbiology
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J. Smith, J. M. Alfieri, N. Anthony, P. Arensburger, G. N. Athrey, J. Balacco, et al. Fourth Report on Chicken Genes and Chromosomes 2022.
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G. Femerling, C. van Oosterhout, S. Feng, R. M. Bristol, G. Zhang, et al. Genetic Load and Adaptive Potential of a Recovered Avian Species that Narrowly Avoided Extinction.
Mol Biol Evol
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L. F. K. Kuderna, J. C. Ulirsch, S. Rashid, M. Ameen, et al. Identification of constrained sequence elements across 239 primate genomes.
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C. Liu, X. Han, J. L. Steenwyk, X.‐X. Shen. Temporal transcriptomics provides insights into host‒pathogen interactions: a case study of Didymella pinodella and disease-resistant and disease-susceptible pea varieties.
Crop Health
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D. Wu, L. Xie, Y. Sun, Y. Huang, L. Jia, C. Dong, et al. A syntelog-based pan-genome provides insights into rice domestication and de-domestication.
Genome Biology
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L. F. K. Kuderna, H. Gao, M. C. Janiak, M. Kuhlwilm, J. D. Orkin, T. Bataillon, et al. A global catalog of whole-genome diversity from 233 primate species.
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X.-G. Qi, J. Wu, L. Zhao, L. Wang, X. Guang, P. A. Garber, et al. Adaptations to a cold climate promoted social evolution in Asian colobine primates.
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I. Rivas-González, M. Rousselle, F. Li, L. Zhou, J. Y. Dutheil, K. Munch, et al.Pervasive incomplete lineage sorting illuminates speciation and selection in primates.
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B.-L. Zhang, W. Chen, Z. Wang, W. Pang, M.-T. Luo, S. Wang, et al. Comparative genomics reveals the hybrid origin of a macaque group.
Sci Adv
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X. Bi, L. Zhou, J.-J. Zhang, S. Feng, M. Hu, D. N. Cooper, et al. Lineage-specific accelerated sequences underlying primate evolution.
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Y. Zhou, X. Zhan, J. Jin, L. Zhou, J. Bergman, X. Li, et al. Eighty million years of rapid evolution of the primate Y chromosome.
Nat Ecol Evol
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R. R. Germain, S. Feng, G. Chen, G. R. Graves, J. A. Tobias,, et al. Species-specific traits mediate avian demographic responses under past climate change.
Nat Ecol Evol
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Z. Huang, L. Xu, C. Cai, Y. Zhou, J. Liu, Z. Xu, et al. Three amphioxus reference genomes reveal gene and chromosome evolution of chordates.
PNAS
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L. A. Bergeron, S. Besenbacher, J. Zheng, P. Li, M. F. Bertelsen, B. Quintard, et al. Evolution of the germline mutation rate across vertebrates.
Nature
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R. R. Germain, S. Feng, L. Buffan, C. P. Carmona, G. Chen, G. R. Graves, et al. Changes in the functional diversity of modern bird species over the last million years.
PNAS
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P. Zhang, Y. Zhu, Q. Guo, J. Li, X. Zhan, H. Yu, et al. On the origin and evolution of RNA editing in metazoans.
Cell Rep
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K. Wanders, G. Chen, S. Feng, G. Zhang, T. Szekely, M. Bruford, et al. Polygamy and purifying selection in birds.
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G. Zhang. The mutation rate as an evolving trait.
Nat Rev Genet
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X. Long, D. Charlesworth, J. Qi, R. Wu, M. Chen, Z. Wang, et al. Independent Evolution of Sex Chromosomes and Male Pregnancy-Related Genes in Two Seahorse Species.
Mol Biol Evol
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Y. Zhuang, W. Xu, G. Zhang, H. Mai, X. Li, H. He, et al. Unparalleled details of soft tissues in a Cretaceous ant.
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E. D. Jarvis, G. Formenti, A. Rhie, A. Guarracino, C. Yang, J. Wood, et al. Semi-automated assembly of high-quality diploid human reference genomes.
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Y. Ji, S. Feng, L. Wu, Q. Fang, A. Bruniche-Olsen, J. A. DeWoody, et al. Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds.
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Y. Mao and G. Zhang. A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics.
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Y. Wang, R. B. Gasser, D. Charlesworth and Q. Zhou. Evolution of sexual systems, sex chromosomes and sex-linked gene transcription in flatworms and roundworms.
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